Sealed Temple

The Sealed Temple, once known as the Temple of Hylia, is a location in Skyward Sword. It is located in the Sealed Grounds, deep within Faron Woods, and is where Link initially meets the aged Impa. Zelda confines herself here in the past, where she enters into an era-long slumber until The Imprisoned is destroyed.

The Era of the Goddess Hylia
Long ago, in the Era of the Goddess Hylia, a crack opened up in the earth and from the fissure emerged the Demon King Demise and his demonic hoards, launching a brutal assault on the surface and driving the land into deep despair. In order to save the the surviving humans from the ravages of the brutal assault, she sent part of the Temple of Hylia and the land it resides on skyward, beyond even the clouds, into place which would come to be known as Skyloft many years later. The section of the temple that remained on the surface became known as the Sealed Temple and rested undisturbed for eons, protected by the goddesses' Sheikah attendant, Impa.

The Sky Era
Thousands of years later, in the era of the sky, Link visits the now decaying temple numerous times during his quest, making it a significant location throughout the story. It is the first area of the Surface which he explores, and where he meets an aged Impa for the first time. After receiving the Goddess's Harp from Zelda at the ancient Temple of Time, Link returns to the Sealed Temple and Impa teaches him how to play it. She also guides him as he attempts to reconstruct a second Gate of Time after the first in the Lanayru Province is destroyed by her younger self.

Once the Gate of Time is complete, Link can visit the Sealed Temple in both the distant past and his present. Using this means of time travel, Link is able to plant the Life Tree Seedling in some soft soil in the Temple and acquire the Life Tree Fruit in the present while looking for a means to cure the Thunder Dragon. After Link collects the three pieces of the Triforce and wishes for the destruction of Demise, the Isle of the Goddess and the Statue of the Goddess return to the surface from Skyloft and completes the Temple's previously damaged entry. Ghirahim appears shortly thereafter, abducts Zelda, and uses the Gate of Time to bring her to the past in an attempt to resurrect Demise there. He is able to disarm Impa in the past and escape the Sealed Temple.

After Link battles and defeats Demise in the past and rescues Zelda, he bids farewell to his companion Fi as she goes into an eternal sleep within the Master Sword and puts it rest in a pedestal in the rear chamber where Zelda had slept.

The Era of Chaos
In an era of chaos with wars over the Triforce. To bring an end to these wars, the Ancient Sage, Rauru built a new Temple of Time over the remains of the Sealed Temple in order the protect the only entrance to the Sacred Realm, using the Master Sword and three Spiritual Stones guarded by people of forest, fire and water as keys. Following this was the Era of Prosperity, in which the Kingdom of Hyrule was established and its Royal Family of Hyrule began to watch over the newly established temple.

Trivia

 * The connection between the Sealed Temple in Skyward Sword and the the Temple of Time that appears in Ocarina of Time was confirmed by Hyrule Historia.
 * The crystal that Zelda is sleeping within can be seen in the present time period as far back as the beginning of the game by looking through the door behind Impa.
 * When the Isle of the Goddess rejoins the rest of the Sealed Temple, the completed ceiling of the vestibule has the markings of each of the six Sage Medallions on it.