Shadow Temple

You will find the Shadow Temple in the back of the graveyard in Kakariko Village in a little alcove only accessible using the Nocturne of Shadow. It is filled with undead creatures and deadly traps and mind-bending puzzles everywhere, all designed to trap everyone in the overfilled crypt. It is also filled to the brim with invisible walls and passagways only seeable using the Lens of Truth. The boss of the temple is Bongo Bongo, a giant dead monster with two disembodied hands, a giant body, and one protruding eye, and he beats on a giant drum. Only those who can survive the traps can face this deadly creature, and will probably never defeat him...

In one room, there appears to be a torturing device in the shape of a giant X which implies they put you in the crucifix position and torture you, with an extremely large pool of blood around it, (Which was taken out in later versions, but the Wii Virtual Console version kept it), which are also all over the inside of the Bottom of the Well. This may have been a place to torture prisoners of war during the Great War. Skulls line the walls, there are two ReDeads in a room with walls that close in and crush anyone who enters, which suggests those two ReDeads were tortured humans who were crushed to death in that dungeon. Invisible spikes, and Death statues which swing scythes around and things of the sort may have been used to prevent escapees. A helpless person jumps to "safety", but impales themselves instead. While the Death Statues cut down everyone who's foolish enough to try, as some are invisible. There are fans which blow the victim either into Traps, the moving sharp machines that are likely to kill a regular human, or a bottomless hole.