Captain Stalfos
Freshly-Picked Tingle's Rosy Rupeeland
Captain Stalfos appears in Freshly-Picked Tingle's Rosy Rupeeland, and is the leader of the group of Stalfos pirates.
Oracle of Seasons
Captain Stalfos also appears in Oracle of Seasons and is also the leader of Stalfos pirates. In this game, he drove his ship into the ground right into Subrosia and lost his bell in the process. In order for him to get his ship out of Subrosia, Link must find his bell for him.
It is possible that the Captain stalfos in these games are the same or related in some way as they both command a similar crew of pirates.